Identification of SSR and miRNA from transcriptome of tuberose
Downloads
Published
DOI:
https://doi.org/10.5958/0974-0112.2019.00020.3Keywords:
Polianthes tuberosa, microsatellites, simple sequence repeats (SSR), microRNA.Issue
Section
License
Copyright (c) 2019 Indian J. Hortic.
This work is licensed under a Creative Commons Attribution-ShareAlike 4.0 International License.
Abstract
For identification of SSRs, the tuberose transcripts were searched with perl script MISA and a total of 1,656 SSRs in 1,280 transcripts with frequency of one SSR per 9.33 kb of the sequence were identified. In 7876 EST sequence of tuberose, we have identified 87 copies of miRNA. The SSR markers identified in this study can be used for genetic diversity analysis of tuberose and can be used to select tuberose varieties with required traits. The data generated in this study will help in better understanding of the possible role of the transcribed microsatellites and miRNA. Further the data will provide deeper knowledge of genetic mechanisms, evolutionary relationships between tuberose and other plants..
How to Cite
Downloads
Similar Articles
- S. S. Gantait, Subham Paul, Endogenous reserves of carbohydrates, protein and phenol influences dormancy and sprouting of bulbs of tuberose , Indian Journal of Horticulture: Vol. 79 No. 4 (2022): Indian Journal of Horticulture
- Jagesh K. Tiwari, Rasna Zinta, Vinod Kumar, Devendra Kumar, Tanuja Buckseth, RK Singh, Shashi Rawat, SK Chakrabarti, Development of molecular marker for nitrate reductase (NR) gene to improve nitrogen use efficiency in potato , Indian Journal of Horticulture: Vol. 76 No. 01 (2019): Indian Journal of Horticulture
- Akhilesh Sharma, R.P. Sharma, G.D. Sharma, N.K. Sankhyan, Munish Sharma, Integrated nutrient supply system for cauliflower-French bean-okra cropping sequence in humid temperate zone of north-western Himalayas , Indian Journal of Horticulture: Vol. 71 No. 02 (2014): Indian Journal of Horticulture
- Israr Ahmad, Muthukumar M., J. P. Verma, Anju Bajpai, S. Rajan, Molecular fingerprints and genetic relatedness of traditional mango cultivars using SSR markers , Indian Journal of Horticulture: Vol. 76 No. 01 (2019): Indian Journal of Horticulture
- Samriti Sharma, Rajinder Kaur, Krishan Kumar, Studies on genetic fidelity of long term micropropagated culture derived plants of Ofra strawberry using molecular markers , Indian Journal of Horticulture: Vol. 76 No. 04 (2019): Indian Journal of Horticulture
- Sapna Panwar, Kanwar Pal Singh, Namita ., T. Janakiram, H. Sonah, T.R. Sharma, DNA fingerprinting in African marigold (Tagetes erecta L.) genotypes using ISSR and URP markers , Indian Journal of Horticulture: Vol. 75 No. 01 (2018): Indian Journal of Horticulture
- Taramla Raman, Vidya S Gupta, Susmita Shukla, A robust micropropagation protocol for genetically true to type plants of Phule Arakta pomegranate , Indian Journal of Horticulture: Vol. 76 No. 01 (2019): Indian Journal of Horticulture
- Deepa Samant, A.K. Singh, Manish Srivastav, N.K. Singh, Assessment of genetic diversity in mango using inter-simple sequence repeat markers , Indian Journal of Horticulture: Vol. 67 No. Special Issue (2010): Indian Journal of Horticulture
- Ramya Sree M., Sanjay Kumar Singh, Jai Prakash, Chavlesh Kumar, Megha R., Molecular detection of powdery mildew resistance in indigenous and exotic Vitis genotypes , Indian Journal of Horticulture: Vol. 82 No. 01 (2025): Indian Journal of Horticulture
- Koushalya Devi, Genetic diversity of Ambri apple variants of Jammu region in India , Indian Journal of Horticulture: Vol. 78 No. 4 (2021): Indian Journal of Horticulture
You may also start an advanced similarity search for this article.
Most read articles by the same author(s)
- Shrawan Singh, Pritam Kalia, Manisha Mangal, Hadassah Chinthagunti, Chetna Chug, Sheshnath Mishra, Shivakumara T.N, Uma Rao, In Vitro screening technique and polymorphic DNA markers for introgression of root knot nematode resistance in tropical carrot , Indian Journal of Horticulture: Vol. 76 No. 03 (2019): Indian Journal of Horticulture
